rs390784 chr19:43984037 G>T
- Sequence
gctcccgcaggcgtttcgcgagta[G/T]cttgggaggcgtgggaattttggc
- ASB in cell types
- HEK293 (embryonic kidney) K562 (myelogenous leukemia) MOLT-4 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- ZBT40_HUMAN CDK9_HUMAN NRF1_HUMAN IKZF1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZBT40_HUMAN | 2.92 | -0.52 | 1.50 | n/a | No Hit | |||
| CDK9_HUMAN | 1.99 | 1.02 | 1.33 | n/a | n/a | |||
| NRF1_HUMAN | 0.99 | 0.14 | 2.00 | n/a | No Hit | |||
| IKZF1_HUMAN | 1.21 | 0.14 | 1.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cortex, Breast_Mammary_Tissue, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood