rs392227 chr5:180619934 G>T
- Sequence
aaggagaggtggacaggaggccgc[G/T]catcctcccgggtaggtgtgacag
- ASB in cell types
- HEK293T (embryonic kidney)
- ASB for transcription factors
- PRDM9_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PRDM9_HUMAN | 1.77 | -0.94 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Caudate_basal_ganglia, Brain_Putamen_basal_ganglia, Muscle_Skeletal, Nerve_Tibial, Testis