rs392470 chr8:77600968 T>A
- Sequence
attgaggcattattcacagtagcc[T/A]acaggtggagcaacctaaatgtcc
- ASB in cell types
- foreskin keratinocyte MS-1 (Small cell lung carcinoma) GM12890 (Lymphoblastoid Cell Lines) EOL-1 (Acute myeloid leukemia)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.01 | 2.17 | 1.59 | 2.70 | Concordant | |||
| RAD21_HUMAN | -0.39 | 2.22 | 1.38 | n/a | n/a |
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Motif analysis
