rs394199 chr6:33585803 C>T

Sequence
ggccggcggctcaggggtgcaata[C/T]cagcaggtaccaccagatggtacc
ASB in cell types
pancreas LNCaP (prostate carcinoma) upper lobe of left lung LNCaP C4-2B (prostate carcinoma)
ASB for transcription factors
CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 0.92 0.54 3.4·10-251.00 1.43 -3.08 Concordant
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Motif analysis

CTCF_HUMAN Concordant
CTCF_HUMAN pic

Genetic associations

EMBL-EBI multiple sclerosis and systolic blood pressure (pleiotropy)
GRASP advanced age-related macular degeneration,  diastolic blood pressure (dbp),  rheumatoid arthritis,  sporadic creutzfeldt-jakob disease,  systolic blood pressure (sbp)
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Tibial,  Brain_Frontal_Cortex_BA9,  Brain_Hypothalamus,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Heart_Atrial_Appendage,  Lung,  Muscle_Skeletal,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid

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