rs394452 chr2:219055315 A>G

Sequence
gtaccaatgcacaccctcccccgg[A/G]gtccagctgccccatgccaagctg
ASB in cell types
TMD8 (diffuse large B-cell lymphoma)
ASB for transcription factors
ITF2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ITF2_HUMAN n/a 3.12 1.004.6·10-3 2.00 2.48 Concordant
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Motif analysis

ITF2_HUMAN Concordant
ITF2_HUMAN pic

Genetic associations

GRASP diastolic blood pressure (dbp),  rheumatoid arthritis,  years of education
GTEx eQTL Adipose_Subcutaneous,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Hypothalamus,  Brain_Spinal_cord_cervical_c-1,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Mucosa,  Lung,  Nerve_Tibial,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Small_Intestine_Terminal_Ileum,  Testis,  Thyroid,  Whole_Blood

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