rs395671 chr6:33585900 G>C
- Sequence
gctggaggccacactaggtgtaac[G/C]ggtcttcctctgggtttgggaagt
- ASB in cell types
- CTV-1 (Adult T acute lymphoblastic leukemia) TTC-1240 (Rhabdoid tumor of the kidney) adult erythroblasts T47D (invasive ductal carcinoma)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN SPI1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.77 | 0.43 | 1.46 | 1.08 | Weak Discordant | |||
| RAD21_HUMAN | 0.47 | 0.74 | 1.69 | n/a | n/a | |||
| SPI1_HUMAN | 0.63 | 1.12 | 1.25 | 0.04 | Weak Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Breast_Mammary_Tissue, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Vagina, Whole_Blood