rs397553 chr20:43657442 G>A
- Sequence
cgaacgagaccacgccaccgagaa[G/A]aagcctctggggcgcggggctggt
- ASB in cell types
- HEK293 (embryonic kidney) LNCaP C4-2B (prostate carcinoma) breast tumor
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| HEK293 (embryonic kidney) | 0.38 | 0.91 | 2.13 | |||
| LNCaP C4-2B (prostate carcinoma) | 1.34 | -0.84 | 1.08 | |||
| breast tumor | -0.78 | 2.85 | 2.00 |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Frontal_Cortex_BA9, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Small_Intestine_Terminal_Ileum, Spleen, Testis, Thyroid, Whole_Blood