rs398157 chr15:65518075 C>T
- Sequence
agggccttggagatctaagcgtct[C/T]cttgtggtggaaagaaatctgaac
- ASB in cell types
- GM02610 (Lymphoblastoid Cell Lines) MCF10A (breast epithelial cells)
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.44 | 0.42 | 1.25 | -0.83 | Weak Concordant |
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Motif analysis
Genetic associations
GRASP aortic valve calcium, bipolar disorder, cystatin c in serum, mitral annular calcium, parkinsons disease, triglycerides
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Transverse, Esophagus_Mucosa, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Whole_Blood