rs398407 chr5:65061696 C>T
- Sequence
tcacactccacagacctcagttac[C/T]gttgactgcctgtagcagcaccag
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) GM18486 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- STAG1_HUMAN FOXK2_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAG1_HUMAN | 1.46 | 1.14 | 1.00 | n/a | n/a | |||
| FOXK2_HUMAN | -2.10 | 2.41 | 1.50 | 5.07 | Concordant |
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Motif analysis
