rs399888 chr21:42009514 G>A
- Sequence
ctccaagcggggagacggtcgccg[G/A]ccgagcagcagggctcctggccgg
- ASB in cell types
- K562 (myelogenous leukemia) GM19240 (B cells Lymphoblastoid Cell Lines) foreskin keratinocyte GM12892 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.31 | 1.44 | 1.53 | n/a | No Hit | |||
| STAG1_HUMAN | 0.62 | 1.02 | 1.29 | n/a | n/a |
Items per page:
1 – 2 of 2