rs401754 chr6:27814760 T>A
- Sequence
gacatggcaaaaggtctattacct[T/A]tacggtcaagaaagactgaaatga
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) HepG2 (hepatoblastoma) GM12891 (male B- cells lymphoblastoid cell line)
- ASB for transcription factors
- STAG1_HUMAN MEF2B_HUMAN ZBT40_HUMAN KLF5_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAG1_HUMAN | 2.17 | -2.27 | 1.17 | n/a | n/a | |||
| MEF2B_HUMAN | 2.83 | -2.82 | 1.00 | -0.44 | Weak Concordant | |||
| ZBT40_HUMAN | 2.54 | -2.26 | 1.00 | n/a | No Hit | |||
| KLF5_HUMAN | 2.38 | n/a | 1.00 | n/a | No Hit | |||
| FOXK2_HUMAN | 2.25 | -1.90 | 1.50 | n/a | No Hit |
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Motif analysis
