rs401826 chr9:134025469 C>T
- Sequence
atggagacacggcccagcggccgc[C/T]ggccccgccctgggagccccgcag
- ASB in cell types
- HepG2 (hepatoblastoma) renal cortex ESO-26 (Gastroesophageal junction adenocarcinoma) GM12892 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- SP130_HUMAN KLF5_HUMAN STAG1_HUMAN GATD1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SP130_HUMAN | -1.65 | 1.95 | 1.00 | n/a | n/a | |||
| KLF5_HUMAN | 1.90 | -1.63 | 1.00 | n/a | No Hit | |||
| STAG1_HUMAN | 1.49 | -0.20 | 1.00 | n/a | n/a | |||
| GATD1_HUMAN | -1.80 | 2.20 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Stomach, Testis, Thyroid, Whole_Blood