rs4026 chr8:41788192 C>T

Sequence
acagtctcgatgacagattcaaga[C/T]gatgtcgcctcctgtttctctgat
ASB in cell types
HEK293 (embryonic kidney) HCASMC (Human coronary artery smooth muscle cells)
ASB for transcription factors
SP7_HUMAN TCF21_HUMAN ZBT20_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SP7_HUMAN n/a 3.35 1.001.5·10-3 2.00 n/a No Hit
TCF21_HUMAN n/a 2.87 1.000.01 3.00 n/a No Hit
ZBT20_HUMAN n/a 2.76 1.000.04 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Brain_Spinal_cord_cervical_c-1,  Colon_Sigmoid,  Colon_Transverse,  Nerve_Tibial

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