rs40363 chr16:3459056 G>A

Sequence
ttcactctgccaagtccttgaggc[G/A]tacacttttgtgtcactcatttat
ASB in cell types
22RV1 (prostate carcinoma)
ASB for transcription factors
ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN 3.26 n/a 1.4·10-31.00 2.00 -3.67 Concordant
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Motif analysis

ANDR_HUMAN Concordant
ANDR_HUMAN pic

Genetic associations

EMBL-EBI tuberculosis
GRASP chronic kidney disease,  parkinsons disease,  years of education
GTEx eQTL Adipose_Subcutaneous,  Artery_Aorta,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Esophagus_Muscularis,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid,  Whole_Blood

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