rs403731 chr7:108103772 A>G

Sequence
tgtttggaggaatttgtcttcatg[A/G]taatgtctacactgtttgtctttt
ASB in cell types
MCF7 (Invasive ductal breast carcinoma)
ASB for transcription factors
GATA3_HUMAN FOXA1_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
GATA3_HUMAN 2.87 -1.36 0.021.00 1.75 -5.08 Concordant
FOXA1_HUMAN 1.14 -0.07 0.021.00 1.84 n/a No Hit
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Motif analysis

GATA3_HUMAN Concordant
GATA3_HUMAN pic

Genetic associations

GRASP advanced age-related macular degeneration,  advanced age-related macular degeneration (geographic atrophy),  rheumatoid arthritis, combined control dataset, gender differentiated,  tardive dyskinesia
GTEx eQTL Cells_Cultured_fibroblasts,  Muscle_Skeletal

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