rs404143 chr6:16409955 G>A

Sequence
ggaacagatttgagtttgtccaaa[G/A]catgcttggtacttgaaaattaac
ASB in cell types
glioblastoma cells GM17942 (lymphoblastoid cell) prostate gland LNCaP (prostate carcinoma)
ASB for transcription factors
CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 0.51 1.12 1.004.9·10-9 1.22 n/a No Hit
Items per page:
1 – 1 of 1

Motif analysis

No data available

Genetic associations

GRASP birth weight,  hip bone mineral density (bmd)

Download