ADASTRA v6.1.0
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rs40448
chr16:11203311
T
>
C
Sequence
tcactctccagactgtaaaatcaa[T/C]acctggcccaaatagcaacaacaa
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)
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View in UCSC Genome Browser
View in PheLiGe
0.05
FDR threshold
0
ES threshold
Color scale
-log10 FDR of Ref (
T
) ASB
-log10 FDR of Alt (
C
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+4 others)
Selected columns
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Cell type
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
GM12878 (female B-cells lymphoblastoid cell line)
0.45
1.00
1.00
3.7·10
-7
1.08
Items per page:
5
1 – 1 of 1
Motif analysis
No data available
Genetic associations
GRASP
adiponectin levels
,
hdl cholesterol
,
hdl cholesterol change with statins
,
ldl cholesterol
,
simpson-angus scale
,
total cholesterol
GTEx eQTL
Artery_Aorta
,
Artery_Tibial
,
Breast_Mammary_Tissue
,
Esophagus_Gastroesophageal_Junction
,
Esophagus_Muscularis
,
Muscle_Skeletal
,
Nerve_Tibial
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Generated by ADASTRA database
2024.11.16 v6.1.0 Mabel
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale