rs406133 chr19:40585915 C>G
- Sequence
acatgccactattatgtcattttt[C/G]tttgttttttgagacagtctcgct
- ASB in cell types
- MOLM14 (Adult acute myeloid leukemia) K562 (myelogenous leukemia)
- ASB for transcription factors
- CDK8_HUMAN PRDM1_HUMAN GLIS1_HUMAN SMCA4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CDK8_HUMAN | -0.43 | 1.60 | 1.50 | n/a | n/a | |||
| PRDM1_HUMAN | -2.59 | 2.51 | 5.00 | n/a | No Hit | |||
| GLIS1_HUMAN | -2.78 | 2.60 | 5.00 | n/a | No Hit | |||
| SMCA4_HUMAN | -0.70 | 1.60 | 1.75 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Cells_Cultured_fibroblasts, Lung, Nerve_Tibial, Spleen, Whole_Blood