rs406334 chr2:47752548 A>G
- Sequence
ccctttgagagtgacaaagaacaa[A/G]actgttcattccgtcatcatttca
- ASB in cell types
- Th1-cells GM12878 (female B-cells lymphoblastoid cell line) MDM(monocyte derived macrophages) BEAS-2B (bronchial epithelium)
- ASB for transcription factors
- TF65_HUMAN TBX21_HUMAN GCR_HUMAN FOXK2_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TF65_HUMAN | -5.64 | 3.30 | 2.00 | n/a | No Hit | |||
| TBX21_HUMAN | 2.29 | -1.46 | 1.00 | n/a | No Hit | |||
| GCR_HUMAN | 0.65 | 1.23 | 1.06 | 0.05 | Weak Concordant | |||
| FOXK2_HUMAN | 1.90 | -3.38 | 1.50 | n/a | No Hit |
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Motif analysis
