rs4078410 chr2:112055265 T>C
- Sequence
ctcccttgcacgttccggctcctc[T/C]tctatcttcacgcccacgctaggc
- ASB in cell types
- HepG2 (hepatoblastoma) MCF7 (Invasive ductal breast carcinoma) 22RV1 (prostate carcinoma) primary B-CLL cells
- ASB for transcription factors
- CLOCK_HUMAN ZN223_HUMAN ANDR_HUMAN MNT_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CLOCK_HUMAN | n/a | 4.20 | 1.00 | n/a | No Hit | |||
| ZN223_HUMAN | -3.04 | 3.28 | 1.00 | 2.91 | Concordant | |||
| ANDR_HUMAN | 0.07 | 2.42 | 2.00 | n/a | No Hit | |||
| MNT_HUMAN | -1.04 | 2.36 | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Stomach, Thyroid, Whole_Blood