rs41178 chr22:30044544 G>A
- Sequence
ctttagtcatttattacctcattt[G/A]aattgatctatcatatgatcaaca
- ASB in cell types
- HEK293 (embryonic kidney) HUVEC-C (HUVEC, umbilical vein endothelial cells)
- ASB for transcription factors
- ZN664_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZN664_HUMAN | n/a | 2.67 | 2.00 | 6.82 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Pancreas, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood