rs411817 chr5:95641950 A>G

Sequence
ggccagtgttttgcttcaggctca[A/G]tgtaggttcggtggtatttgctga
ASB in cell types
VCaP (prostate carcinoma) MCF7 (Invasive ductal breast carcinoma)
ASB for transcription factors
PRGR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
PRGR_HUMAN 2.34 0.75 0.021.00 2.12 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP ldl cholesterol,  total cholesterol change with statins,  triglycerides change with statins
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Brain_Cerebellar_Hemisphere,  Breast_Mammary_Tissue,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Heart_Atrial_Appendage,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Small_Intestine_Terminal_Ileum,  Spleen,  Testis,  Thyroid

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