rs411988 chr17:58631673 G>A
- Sequence
gactgccttctctagagaagaacg[G/A]tcaccaacagcaaacagcagttag
- ASB in cell types
- A549 (lung carcinoma) SK-N-SH (neuroblastoma) GM19238 (female B-cells lymphoblastoid cell lines) BIN-67 (Ovarian small cell carcinoma, hypercalcemic type)
- ASB for transcription factors
- JUN_HUMAN BCL3_HUMAN FOXK2_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | 1.77 | 0.79 | 2.62 | n/a | No Hit | |||
| BCL3_HUMAN | 1.77 | -0.87 | 3.00 | n/a | n/a | |||
| FOXK2_HUMAN | -3.79 | 2.40 | 1.50 | n/a | No Hit | |||
| RAD21_HUMAN | 0.85 | 0.27 | 1.19 | n/a | n/a | |||
| ANM1_HUMAN | 2.30 | -1.20 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP birth weight, chronic kidney disease, college completion, serum creatinine, systolic blood pressure (sbp), years of education
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Kidney_Cortex, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood