rs41269085 chr1:44819976 C>T
- Sequence
agtaaaaggcgaaagatttatgcg[C/T]tttgaagagaaacccgagtatatt
- ASB in cell types
- K562 (myelogenous leukemia) HCT-116 (colon carcinoma) HEK293 (embryonic kidney) MV-4-11 (Childhood acute monocytic leukemia)
- ASB for transcription factors
- SMAD3_HUMAN ZN395_HUMAN BRD4_HUMAN MED26_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SMAD3_HUMAN | -3.58 | 2.23 | 1.67 | n/a | No Hit | |||
| ZN395_HUMAN | 2.27 | -2.27 | 1.00 | n/a | n/a | |||
| BRD4_HUMAN | 1.11 | 0.28 | 1.24 | n/a | n/a | |||
| MED26_HUMAN | 1.52 | -1.03 | 1.00 | n/a | n/a | |||
| STAT1_HUMAN | 2.71 | 0.59 | 1.50 | n/a | No Hit |
Items per page:
1 – 5 of 9
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Cortex, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood