rs413147 chr3:138791541 A>G

Sequence
ctgcagctccaccatcatacagag[A/G]aaaaggcctgactctggtctacaa
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
COT1_HUMAN IKZF1_HUMAN IKZF2_HUMAN ATF7_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
COT1_HUMAN 1.73 -1.73 3.8·10-61.00 1.00 n/a No Hit
IKZF1_HUMAN 2.19 -1.63 2.7·10-51.00 1.00 n/a n/a
IKZF2_HUMAN 2.16 -1.87 1.3·10-41.00 1.00 n/a n/a
ATF7_HUMAN 3.23 -3.10 1.5·10-41.00 1.00 n/a No Hit
MTA2_HUMAN 2.67 -2.54 0.021.00 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP total cholesterol change with statins
GTEx eQTL Adipose_Subcutaneous,  Artery_Aorta,  Artery_Tibial,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Hypothalamus,  Brain_Nucleus_accumbens_basal_ganglia,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Muscle_Skeletal,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid

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