rs41474647 chr12:125065410 C>T

Sequence
ggggcggggcctgggccaagcggc[C/T]cgcaggaggcggcggcggccgttc
ASB in cell types
HepG2 (hepatoblastoma) breast tumor
ASB for transcription factors
TYY1_HUMAN ESR1_HUMAN
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View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TYY1_HUMAN 2.28 -4.33 7.7·10-51.00 2.00 n/a No Hit
ESR1_HUMAN 2.45 n/a 5.3·10-31.00 2.00 -2.42 Concordant
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Motif analysis

ESR1_HUMAN Concordant
ESR1_HUMAN pic

Genetic associations

GTEx eQTL Artery_Aorta,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Heart_Left_Ventricle,  Muscle_Skeletal,  Nerve_Tibial,  Prostate,  Thyroid

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