rs41475048 chr1:183089317 A>G

Sequence
catttcttctgatatcactgttta[A/G]tgtttgctctcaatgtaaagggaa
ASB in cell types
HEK293 (embryonic kidney)
ASB for transcription factors
ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN 1.31 0.16 4.5·10-31.00 1.87 -0.20 Weak Concordant
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Motif analysis

ANDR_HUMAN Weak Concordant
ANDR_HUMAN pic

Genetic associations

EMBL-EBI diastolic blood pressure
GRASP ldl cholesterol,  lp-pla2 mass,  total cholesterol
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Brain_Amygdala,  Brain_Anterior_cingulate_cortex_BA24,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Cortex,  Brain_Hypothalamus,  Brain_Putamen_basal_ganglia,  Colon_Sigmoid,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Uterus,  Whole_Blood

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