rs41523455 chr19:18281833 C>T
- Sequence
gtgggttgacgtcatgggggcggc[C/T]gcgcgcccgggccgggtcaccccg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) primary endometrium cancer HeLa (cervical adenocarcinoma) MDA-MB-231-1833 (breast cancer cells, bone-tropic metastatic line)
- ASB for transcription factors
- GCR_HUMAN ATF7_HUMAN INT11_HUMAN GATA3_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | 0.71 | 1.00 | 1.07 | n/a | No Hit | |||
| ATF7_HUMAN | -0.15 | 1.44 | 1.50 | n/a | No Hit | |||
| INT11_HUMAN | -0.20 | 1.63 | 1.67 | n/a | n/a | |||
| GATA3_HUMAN | n/a | 2.34 | 2.00 | n/a | No Hit | |||
| CDN1B_HUMAN | 1.21 | 0.43 | 2.25 | n/a | n/a |
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