rs41540312 chr2:47783075 C>T
- Sequence
gggcggggcctggcgcgcaccgcc[C/T]gcgcacggcgaggcgcctgttgat
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- NRF1_HUMAN ZBT26_HUMAN CTCF_HUMAN CREB1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NRF1_HUMAN | -1.44 | 2.90 | 1.50 | 3.02 | Concordant | |||
| ZBT26_HUMAN | -0.99 | 0.99 | 1.00 | n/a | No Hit | |||
| CTCF_HUMAN | 0.61 | 1.32 | 1.15 | n/a | No Hit | |||
| CREB1_HUMAN | -0.15 | 1.25 | 1.83 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cortex, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Whole_Blood