rs41546314 chr6:29942601 C>T
- Sequence
cctcctcctgctactctcgggggc[C/T]ctggccctgacccagacctgggcg
- ASB in cell types
- HCT-116 (colon carcinoma) LNCaP (prostate carcinoma) GM12878 (female B-cells lymphoblastoid cell line) HepG2 (hepatoblastoma)
- ASB for transcription factors
- MBD4_HUMAN TBP_HUMAN STAT1_HUMAN RB_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MBD4_HUMAN | 2.02 | -1.16 | 1.00 | n/a | n/a | |||
| TBP_HUMAN | 2.03 | -0.41 | 1.33 | n/a | No Hit | |||
| STAT1_HUMAN | 2.29 | -0.48 | 1.33 | n/a | No Hit | |||
| RB_HUMAN | 3.12 | n/a | 1.00 | n/a | n/a | |||
| RAD21_HUMAN | 2.77 | 0.33 | 1.33 | n/a | n/a |
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