rs415536 chr1:45125717 T>C
- Sequence
aatcctgggaggcggagccgagat[T/C]gcgtcattgcactccagcctggct
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- CEBPG_HUMAN ATF7_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CEBPG_HUMAN | 3.44 | -3.79 | 1.00 | -4.64 | Concordant | |||
| ATF7_HUMAN | 2.74 | n/a | 1.00 | -2.41 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Breast_Mammary_Tissue, Colon_Sigmoid, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Pancreas, Stomach, Testis, Thyroid