rs416119 chr7:138752969 C>T
- Sequence
ggctcctttgacctgtggctgtca[C/T]ctggccttgaactctcctgagcag
- ASB in cell types
- iPS-derived dermal fibroblasts breast tumor
- ASB for transcription factors
- RARA_HUMAN ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RARA_HUMAN | 2.47 | -0.02 | 1.00 | -0.84 | Weak Concordant | |||
| ESR1_HUMAN | 2.81 | -5.04 | 2.00 | -4.11 | Concordant |
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Motif analysis
Genetic associations
GRASP adiponectin levels, advanced age-related macular degeneration, advanced age-related macular degeneration (geographic atrophy)