rs416479 chr1:229171857 T>C

Sequence
aaaaaaaaccttaaatcatcagtc[T/C]ggatcaaaagagggtttaataaat
ASB in cell types
22RV1 (prostate carcinoma)
ASB for transcription factors
ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN 2.68 0.22 0.020.96 2.00 0.50 Weak Discordant
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Motif analysis

ANDR_HUMAN Weak Discordant
ANDR_HUMAN pic

Genetic associations

GRASP hdl cholesterol change with statins,  infant head circumference,  partial epilepsy,  prop taste detection threshold
GTEx eQTL Minor_Salivary_Gland,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Stomach,  Thyroid

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