rs41746 chr7:116803020 A>T

Sequence
tcttgtaaacaagaaacgctgaat[A/T]caaaggctttgtgaaatcctgccc
ASB in cell types
A549 (lung carcinoma) MCF7 WS8 cells
ASB for transcription factors
FOXA1_HUMAN RAD21_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN 0.20 1.02 1.006.7·10-3 1.73 n/a No Hit
RAD21_HUMAN 0.64 1.05 0.759.3·10-3 1.35 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP hdl cholesterol,  homa-b,  paternal transmission distortion,  simpson-angus scale,  transmission distortion,  triglycerides
GTEx eQTL Artery_Aorta,  Artery_Tibial,  Brain_Amygdala,  Brain_Caudate_basal_ganglia,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Hippocampus,  Brain_Hypothalamus,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Putamen_basal_ganglia,  Brain_Spinal_cord_cervical_c-1,  Brain_Substantia_nigra,  Esophagus_Muscularis,  Lung,  Nerve_Tibial,  Skin_Sun_Exposed_Lower_leg,  Stomach,  Thyroid

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