rs419842 chr20:43682171 A>T
- Sequence
tgaacaggtgttcggtttctcaac[A/T]gtgagactgaaactgaggggaagt
- ASB in cell types
- germinal center B-cells primary B-CLL cells
- ASB for transcription factors
- BRD4_HUMAN CBP_HUMAN MEF2B_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BRD4_HUMAN | 1.88 | 0.22 | 2.29 | n/a | n/a | |||
| CBP_HUMAN | n/a | 1.81 | 2.00 | n/a | n/a | |||
| MEF2B_HUMAN | n/a | 2.33 | 4.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, bipolar disorder, coronary artery disease (cad), height, microalbuminuria, refractive error, systolic blood pressure (sbp), urinary albumin-to-creatinine ratio
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Small_Intestine_Terminal_Ileum, Spleen, Testis, Thyroid, Whole_Blood