rs420038 chr6:160387116 C>T
- Sequence
atagacagctgacaggtcaggaca[C/T]agactttggtggcaactgcccgag
- ASB in cell types
- Peyer's patch
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| Peyer's patch | 2.35 | -1.83 | 1.00 |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration (geographic atrophy), aortic valve calcium, body mass index (bmi), childhood acute lymphoblastic leukemia, coronary artery disease (cad), early-outgrowth colony-forming units, hdl cholesterol, ldl cholesterol, lp-pla2 activity, lp-pla2 mass, myocardial infarction (mi), panic disorder, total cholesterol, triglycerides
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Colon_Transverse, Esophagus_Mucosa, Lung, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis