rs420215 chr21:27155306 A>G
- Sequence
gccctaggatgctctgatcaaaca[A/G]tctatagtctctaccaccgcagtt
- ASB in cell types
- LNCaP (prostate carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN TLE3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 0.01 | 1.48 | 1.72 | -1.48 | Weak Discordant | |||
| TLE3_HUMAN | -3.52 | 2.13 | 2.00 | n/a | n/a |
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Motif analysis
