rs422907 chr6:33590881 G>A

Sequence
gggtgagggcagagggctgggctc[G/A]ggtcaaggctagaatggtgagagc
ASB in cell types
MDA-MB-231ERb(triple negative breast cancer)
ASB for transcription factors
ESR2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ESR2_HUMAN 0.60 0.58 0.011.00 1.00 0.42 Weak Discordant
Items per page:
1 – 1 of 1

Motif analysis

ESR2_HUMAN Weak Discordant
ESR2_HUMAN pic

Genetic associations

GRASP college completion,  height,  rheumatoid arthritis,  years of education
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Artery_Tibial,  Brain_Cerebellum,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Minor_Salivary_Gland,  Muscle_Skeletal,  Nerve_Tibial,  Ovary,  Pancreas,  Pituitary,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Stomach,  Testis,  Thyroid,  Whole_Blood

Download