rs42336 chr7:116801535 A>G
- Sequence
gctgagaggtttataactactatt[A/G]acttaccatgtgaccccagggcag
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- CUX1_HUMAN ONEC2_HUMAN CREB1_HUMAN FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CUX1_HUMAN | n/a | 2.46 | 2.00 | 4.07 | Concordant | |||
| ONEC2_HUMAN | -1.13 | 2.37 | 2.00 | 4.13 | Concordant | |||
| CREB1_HUMAN | n/a | 2.33 | 3.00 | n/a | No Hit | |||
| FOXA1_HUMAN | -0.94 | 1.74 | 1.75 | 3.79 | Concordant |
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Motif analysis
Genetic associations
GRASP hdl cholesterol, homa-b, paternal transmission distortion, simpson-angus scale, transmission distortion, triglycerides
GTEx eQTL Artery_Aorta, Artery_Tibial, Brain_Amygdala, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Esophagus_Muscularis, Lung, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Stomach, Thyroid