rs42377 chr7:92614358 G>A

Sequence
ccaaaagaaatgataaagcatgat[G/A]tcatacagaaggttaaaatagact
ASB in cell types
HepG2 (hepatoblastoma)
ASB for transcription factors
ATF7_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ATF7_HUMAN 2.98 n/a 1.0·10-31.00 1.00 -4.82 Concordant
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Motif analysis

ATF7_HUMAN Concordant
ATF7_HUMAN pic

Genetic associations

EMBL-EBI heel bone mineral density,  height,  systolic blood pressure,  weight
GRASP advanced age-related macular degeneration,  height,  infant head circumference,  rheumatoid arthritis
GTEx eQTL Adipose_Subcutaneous,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Small_Intestine_Terminal_Ileum,  Stomach,  Testis

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