rs42383 chr7:116817349 A>T

Sequence
cagtgtcccaaagactgtggagag[A/T]ctgaatttgctgactttgggtggg
ASB in cell types
HT1080 (fibrosarcoma)
ASB for transcription factors
SSRP1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SSRP1_HUMAN 2.61 -2.35 0.021.00 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP fasting insulin,  hdl cholesterol,  height,  homa-b,  homa-ir,  triglycerides
GTEx eQTL Artery_Aorta,  Artery_Tibial,  Brain_Amygdala,  Brain_Caudate_basal_ganglia,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Hippocampus,  Brain_Hypothalamus,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Putamen_basal_ganglia,  Brain_Spinal_cord_cervical_c-1,  Brain_Substantia_nigra,  Cells_Cultured_fibroblasts,  Lung,  Nerve_Tibial,  Stomach

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