rs424079 chr1:2139901 C>A
- Sequence
cgtggggtataaaccatggtaggg[C/A]cacgtctctgagctgtggctgctg
- ASB in cell types
- neutrophils from periferal blood pancreas GM12892 (female B-cells lymphoblastoid cell line)
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| neutrophils from periferal blood | 0.41 | 3.19 | 2.00 | |||
| pancreas | -1.74 | 2.13 | 1.42 | |||
| GM12892 (female B-cells lymphoblastoid cell line) | -0.28 | 1.58 | 1.17 |
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Motif analysis
No data available
Genetic associations
GRASP chronic kidney disease, height, ldl cholesterol, microalbuminuria, resistance to kuru in aged women despite likely exposure, serum creatinine, stabilized warfarin dose, waist hip ratio
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Breast_Mammary_Tissue, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood