rs424761 chr5:671855 A>G
- Sequence
ggtggcacccacagcaatggaggg[A/G]cagggttgggtgtggggagtgcag
- ASB in cell types
- keratinocytes Jurkat (T-cells) THP-1 (acute monocytic leukemia)
- ASB for transcription factors
- SNAI2_HUMAN CTCF_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SNAI2_HUMAN | 2.97 | n/a | 1.50 | n/a | No Hit | |||
| CTCF_HUMAN | 0.85 | 0.35 | 1.55 | n/a | No Hit | |||
| RAD21_HUMAN | 1.47 | 0.29 | 1.96 | n/a | n/a |
Items per page:
1 – 3 of 3
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Esophagus_Gastroesophageal_Junction, Muscle_Skeletal, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Thyroid