rs4249114 chr16:46390790 C>G
- Sequence
atcgaatggaatcatcatcgaata[C/G]aatagaatggaatcatcaaatgga
- ASB in cell types
- HEK293 (embryonic kidney) K562 (myelogenous leukemia) GM12878 (female B-cells lymphoblastoid cell line) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- CTCF_HUMAN SP2_HUMAN STAG1_HUMAN ZSA5C_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.97 | 2.32 | 2.19 | n/a | No Hit | |||
| SP2_HUMAN | n/a | 2.16 | 2.00 | n/a | No Hit | |||
| STAG1_HUMAN | 0.51 | 2.91 | 2.13 | n/a | n/a | |||
| ZSA5C_HUMAN | n/a | 2.04 | 2.00 | n/a | No Hit | |||
| TZAP_HUMAN | n/a | 2.23 | 2.00 | n/a | No Hit |
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Motif analysis
