rs425530 chr19:43984634 C>T

Sequence
ttgccgttttttaaatgaggattt[C/T]aggaccatcctgatagaattgttt
ASB in cell types
HEK293 (embryonic kidney) GM12878 (female B-cells lymphoblastoid cell line)
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Cell type
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
HEK293 (embryonic kidney) 0.27 1.10 1.001.2·10-12 4.90
GM12878 (female B-cells lymphoblastoid cell line) 0.23 0.78 0.950.04 1.10
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Motif analysis

No data available

Genetic associations

GRASP acute lung injury following major trauma,  homa-b,  microalbuminuria,  waist hip ratio
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Brain_Cortex,  Breast_Mammary_Tissue,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid,  Whole_Blood

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