rs42646 chr7:90346606 T>A

Sequence
tggggctggtggcgcccgagagca[T/A]cacacaacgcatgcgccagtccgc
ASB in cell types
HepG2 (hepatoblastoma) CD14+ monocytes CD34+ hematopoietic stem cells-derived proerythroblasts tibial nerve
ASB for transcription factors
CTCF_HUMAN RBBP5_HUMAN TYY1_HUMAN STAT1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 0.31 0.89 1.001.5·10-9 1.23 n/a No Hit
RBBP5_HUMAN n/a 3.21 1.004.1·10-6 2.50 n/a n/a
TYY1_HUMAN 2.63 -0.44 1.1·10-40.96 1.00 n/a No Hit
STAT1_HUMAN 0.34 3.67 0.621.3·10-4 1.50 n/a No Hit
GATA1_HUMAN 0.16 2.54 1.007.9·10-4 1.83 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP aortic valve calcium,  birth weight,  fasting blood glucose,  years of education
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Hypothalamus,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Putamen_basal_ganglia,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Ovary,  Pancreas,  Pituitary,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Stomach,  Thyroid,  Whole_Blood

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