rs426501 chr10:117443177 C>G
- Sequence
tgagctcagggagaggctatttag[C/G]gcggcagctgaggggccaatgcag
- ASB in cell types
- GM17942 (lymphoblastoid cell) MDA-MB-231-1833 (breast cancer cells, bone-tropic metastatic line) neutrophils from periferal blood BEAS-2B (bronchial epithelium)
- ASB for transcription factors
- CTCF_HUMAN GCR_HUMAN JUN_HUMAN CDN1B_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.91 | 0.25 | 1.38 | n/a | No Hit | |||
| GCR_HUMAN | 0.84 | 1.45 | 1.00 | n/a | No Hit | |||
| JUN_HUMAN | 1.43 | -0.66 | 2.00 | n/a | No Hit | |||
| CDN1B_HUMAN | 1.95 | -0.56 | 2.00 | n/a | n/a | |||
| BRCA2_HUMAN | 1.77 | -3.73 | 2.00 | n/a | n/a |
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