rs428236 chr6:94324062 T>C
- Sequence
actgatctgacagaagggggagct[T/C]aggaggtagtgtgagtgattggga
- ASB in cell types
- GM02630 (Fanconi anemi) 22RV1 (prostate carcinoma) HUES64 (embryonic stem cells) NB69 (neuroblastoma)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.94 | 2.92 | 1.43 | 1.26 | Weak Concordant | |||
| RAD21_HUMAN | -2.29 | 2.68 | 1.00 | n/a | n/a |
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Motif analysis
