rs4287138 chr1:181430482 G>T
- Sequence
acaaagcacagcttctcttgttcg[G/T]gttactgtggttatgttttgggta
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) 2588 (Lymphoblastoid Cell Lines) CTV-1 (Adult T acute lymphoblastic leukemia) GM02630 (Fanconi anemi)
- ASB for transcription factors
- IRF5_HUMAN HTF4_HUMAN STAG1_HUMAN RELB_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IRF5_HUMAN | 3.44 | n/a | 1.00 | n/a | No Hit | |||
| HTF4_HUMAN | -2.21 | 2.59 | 1.00 | n/a | No Hit | |||
| STAG1_HUMAN | -0.39 | 1.54 | 1.00 | n/a | n/a | |||
| RELB_HUMAN | -0.68 | 1.28 | 1.17 | n/a | No Hit | |||
| EP300_HUMAN | -1.02 | 1.59 | 1.00 | n/a | n/a |
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