rs4287139 chr1:181430507 G>A
- Sequence
gttactgtggttatgttttgggta[G/A]gtcccccacctccctgtgcaagtt
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) GM02630 (Fanconi anemi) 2588 (Lymphoblastoid Cell Lines) L1236 (Hodgkin lymphoma)
- ASB for transcription factors
- IRF5_HUMAN STAG1_HUMAN CTCF_HUMAN HTF4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IRF5_HUMAN | 3.02 | -3.16 | 1.00 | n/a | No Hit | |||
| STAG1_HUMAN | -0.39 | 2.04 | 1.00 | n/a | n/a | |||
| CTCF_HUMAN | 0.05 | 1.67 | 1.20 | n/a | No Hit | |||
| HTF4_HUMAN | -2.04 | 2.42 | 1.00 | n/a | No Hit | |||
| BACH1_HUMAN | n/a | 2.92 | 1.00 | n/a | No Hit |
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Motif analysis
